Michael Gerth
  • News & Blog
  • About
  • Research
    • Experimental evolution of Spiroplasma after host shifts
    • Wolbachia phylogenomics
    • Rickettsial symbionts in green lacewings
    • The role of Wolbachia in quill mites
    • Methods in molecular phylogenetics
  • Publications
  • Resources

A script to automate SRA downloads.

18/7/2017

1 Comment

 
I have written a small script that automates the download of fastq files from the European Nucleotide Archive (ENA). This was created because I was annoyed with the speed NCBI's sra-tools. It takes NCBI SRA accession numbers as input and downloads the fastq files directly from the ENA using wget. The download speed is thus basically only limited by your bandwidth. Any feedback is very welcome!

Find it on the resources page or on github.
1 Comment
Underpinning Richardson link
4/8/2022 13:46:33

Great reeading

Reply



Leave a Reply.

    Welcome!

    This is the website of Michael Gerth. I am a biologist with an interest in insects and the microbes within them. Click here to learn more.

    Archives

    June 2022
    February 2022
    June 2020
    October 2019
    March 2019
    January 2019
    February 2018
    December 2017
    July 2017
    December 2016
    April 2016
    March 2016

    Categories

    All
    Announcements
    Bees
    General
    Gene Repertoire Analysis
    Genomics
    Howto
    Long Branch Attraction
    Phylogenetics
    Post-publication Review
    Publications
    Scripts
    Wolbachia

    RSS Feed


    Tweets by gerth_micha
  • News & Blog
  • About
  • Research
    • Experimental evolution of Spiroplasma after host shifts
    • Wolbachia phylogenomics
    • Rickettsial symbionts in green lacewings
    • The role of Wolbachia in quill mites
    • Methods in molecular phylogenetics
  • Publications
  • Resources